I'm working on liftover vcf from hg38 to hg19. I got this error message back:
Exception in thread "main" htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 906: unparsable vcf record with allele -, for input source: MYPATH
Has anyone encountered similar problem? Please share any thoughts, thanks!
Thanks! I will try it :D