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NIPT related tools & software

Hii, I am new to NIPT related bioinformatics analysis. I have tried with different software but those were of older versions and not running efficiently. Can someone please guide me or tell me about NIPT tools or pipelines available? (I have already tried with Wisecondor & WisecondorX) It will be very helpful for me. Thanks in advance.

nips
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written by smrutimayipanda • smrutimayipanda

Hi, I'm also just begin with NIPT, along with WisecondorX, these are software I'm using or researching on it:

  • Fetal fraction: PREFACE, Seqff, Sanefalcon (I just read manual, not begin yet)
  • Chromosome aneploidy: NIPTeR, NIPTmer (just read manual) Hope you can find what you need
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written by khanhlpbao • khanhlpbao

Hi, I have tried all these things, for chromosome aneuploidy, WisecondorX or wisecondor, both are working well but I need for fetal fraction. I am using sanefalcon, seqff and defrag. So if you are using these three, please let me know. But if you have used PREFACE, I wanted to ask a question. How did you use it without config file? If you have unknown samples, then how will you prepare config file?

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written by smrutimayipanda • smrutimayipanda

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