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TEtranscripts Tool in Galaxy

Hi experts,

I am facing problems while using TEtranscripts tool provided in Galaxy. I need to know how to use this tool as there is no guide available. I tried it myself by It produced errors every time. Can someone guide or share standard settings for this tool? Thanking in advance.

rnaseq transposable_elements te_transcripts
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updated by biofalconch biofalconch • written by gorizwango • gorizwango

Providing what you have already tried as well as the error messages you get can go a long way :). Nevertheless, here is the github repo from the tool, with some guidance how the input files should look like (for example, whether you should provide sorted bam files).

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written by biofalconch biofalconch

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