Extract Ribosomal DNA from Whole Genome Data
How can I extract ribosomal DNA data from whole genome dna sequencing data ? any specific tool available for this purpose ? or if someone guide me how to do it ?
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hafiz.talhamalik
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I think you could use sortmerna, which is used to filter rrna from rna-seq, but since rna-seq is cdna, I assume the tool should be applicable to dna reads as well.
Thanx. let me try that..