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visualize phased vcf file

Does anyone know which software allows visualize VCF file with phasing information? While a VCF file can be loaded in IGV, it does not have an option to display the phasing information (i.e., no difference between 0/1 and 1|0 or 0|1)

vcf phasing
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updated by samuel.a.odonnell samuel.a.odonnell • written by yliueagle yliueagle

2 answers

I wrote: http://lindenb.github.io/jvarkit/VcfPhased01.html

enter image description here

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written by Pierre Lindenbaum Pierre Lindenbaum

I have only ever dealt with the results of whatshap phasing so I don't know if this is applicable but since you mentioned IGV, they have a description on how to use it to visualise their phasing results.

Hope it can be of help

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written by samuel.a.odonnell samuel.a.odonnell

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