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askif4
askif4
Reputation:
20
Joined:
5.7 years ago
Last seen:
1.1 years ago
Location:
Daejeon
Latest posts by user
0 votes
1 reply
615 views
Questions about sample_accession_id and file_accession_id from EGA files
ega open wgs data
updated by GenoMax GenoMax • written by askif4 • askif4
1 vote
5 replies
3.0K views
Problem in loading multiple BAM files in IGV
wgs igv bam
updated by Ram Ram • written by askif4 • askif4
0 votes
0 replies
622 views
Variant calling from merged bam file with one vcf output
bam wgs variant calling
written by askif4 • askif4
0 votes
1 reply
0 views
Comment: Comment: R ComplexHeatmap showing wrong output for for clustering columns
written by askif4 • askif4
0 votes
4 replies
2.0K views
R ComplexHeatmap showing wrong output for for clustering columns
heatmap clustering r dendrogram
updated by seidel seidel • written by askif4 • askif4
0 votes
1 reply
0 views
Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
written by askif4 • askif4
0 votes
3 replies
1.9K views
How to compare alignments(SAM/BAM files) aligned to different references?
sam wgs ngs bam alignment
updated by samuel.a.odonnell samuel.a.odonnell • written by askif4 • askif4
0 votes
0 replies
0 views
Comment: Comment: GRCm39 (mm39) vs GRCm38(mm10)
written by askif4 • askif4
1 vote
2 replies
29K views
GRCm39 (mm39) vs GRCm38(mm10)
genome reference mouse dna dna
updated by GenoMax GenoMax • written by askif4 • askif4
0 votes
0 replies
1.1K views
Is there any good chromosome recombination(crossover) analysis tools that are not old?
recombination assembly gene sequencing
written by askif4 • askif4
0 votes
0 replies
1.6K views
Questions using "WhatsHap" tool for haplotype phasing
snp haplotype phasing sequencing
written by askif4 • askif4
0 votes
0 replies
0 views
Comment: C: How to check if a Fastq file is contaminated with other strains?
written by askif4 • askif4
0 votes
0 replies
0 views
Comment: C: How to check if a Fastq file is contaminated with other strains?
written by askif4 • askif4
0 votes
0 replies
0 views
Comment: C: How to check if a Fastq file is contaminated with other strains?
written by askif4 • askif4
0 votes
0 replies
0 views
Comment: C: How to check if a Fastq file is contaminated with other strains?
written by askif4 • askif4
0 votes
9 replies
4.0K views
How to check if a Fastq file is contaminated with other strains?
gene next-gen sequencing assembly
updated by mathavanbioinfo mathavanbioinfo • written by askif4 • askif4
0 votes
1 reply
0 views
Comment: C: How to calculate VAF from BAM or SAM(+pileups) files using pysam?
written by askif4 • askif4
0 votes
3 replies
2.2K views
How to calculate VAF from BAM or SAM(+pileups) files using pysam?
snp sequencing bam vaf pysam
written by askif4 • askif4
0 votes
0 replies
1.2K views
How to determine specific strains(mouse) from BAM(or VCF) by unknown sample? (using or not using dbSNPs)
snp vcf dbsnp mouse
written by askif4 • askif4
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