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Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?

Hi all,

I need some data for testing. In fact what I need is a data set with breakpoints coordinates and the raw counts by patient cancer related) . Does anybody in here know a repository that have that information?

Thank you!

rnaseq cancer
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updated by Ram Ram • written by Lila M Lila M

1 answer

Hi,

You could obtain the raw HT-Seq counts from Xena Browser. For breakpoints, you may need the original FASTQs or BAMs, unless some other group has already published this data. Previous question here: C: How to analyse number of breakpoints -TCGA data

Kevin

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written by Kevin Blighe Kevin Blighe

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