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How to evaluate phylogenetic congruence between two phylogenetic tree?

I have created two phylogenetic tree based on whole genome SNPs and core genes from the same datasets. I need to evaluate phylogenetic congruence between those two phylogenetic tree. Could anyone please suggest any tool available to do the same.

Thanks in advance.

snp python perl genomics phylogeny

1 answer

Ete3 toolkit can do that but it has a steep learning curve.

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