Plasmid Phylogeny from Whole genome sequencing
Is there any way to construct phylogenetic tree of plasmids from whole genome sequencing? Please suggest the tools or methods for the same
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gayachit
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karthick.1087 •
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karthick.1087 •
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The best would be to sequence the plasmids and do a phylogeny but if you only have whole genome data, I think you would have to extract the plasmid sequences using tools like plasmid finder or plasmid seeker and do a phylogeny the same way as any other using tools like MEGA and MAFFT etc. For reference : https://www.frontiersin.org/articles/10.3389/fmicb.2018.02167/full#h3
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