Plotting Genomic Organization Of A Prokaryotic Protein In Various Species

I want to plot the names of the genes 2 upstream and 2 downstream to my target gene in order to understand its function. I am wondering if there is any tool for that to do it automatically in several species.

python

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updated 13.2 years ago by cts

• written 13.2 years ago by Pappu

very easy in R, import tsv file and plot using ggplot. Take inspiration from volcano-plots-of-microarray-data!!

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written 13.2 years ago by Sukhi Singh

What does "plot the names" mean? What exactly do you want to plot? Genomic coordinates?

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written 13.2 years ago by Neilfws

I guess, he wants to highlight the annotations.

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written 13.2 years ago by Naren

1 answer

There are a number of tools that will plot operons between species for comparison. the two that I've used before are EasyFig, ACT

There are also a number of R packages: ggBio, genoplotr, geneplotter

• 22 views • link

written 13.2 years ago by cts

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