Diagram Of Genes Around A Gene In The Genome

I want to know about the possible function of a bacterial protein by plotting the names of proteins around its coding region from various species. I am wondering if there is any existing tool for it or if it is the way to go. Thanks.

genome

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updated 12.9 years ago by Björn

• written 13.2 years ago by Pappu

2 answers

A few options that come to mind are

NGSPlot https://code.google.com/p/ngsplot/,
HTSeq http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html

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written 13.2 years ago by Istvan Albert

Just to add deeptools, also available in the Galaxy ToolShed.

https://github.com/fidelram/deepTools

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written 12.9 years ago by Björn

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