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Web Page Converting Seq Mapping Score

I am sure it is a very simple question and has been answered here, however I could not find it and has googled it too. I used to use a web page where you add the mapping score after BWA/ Bowtie 2 alignments like 16, 274 -----. it will tell me whether reads are uniquely aligned, one mate aligned aligned to reverse strand and so on. However I am not finding that page Could some one point me to that URL I have spent lot of time searching this. I promise to book mark the site.

Thanks

sequencing mapping
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updated by Simply Bioinformatics Simply Bioinformatics • written by kanwarjag kanwarjag

2 answers

I think you're talking about SAM flags and referring to this very useful webpage: http://picard.sourceforge.net/explain-flags.html

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written by Chris Miller Chris Miller

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