chipseq over various genomic locations
I am looking for a some help to broadly understand how a typical Chipseq peaks will look like over exon, genebody as well as TES. What a pattern of peaks over gene body / exon suggest.
Could some one point me to a paper/ document or figure. I googled and checked on pubmed these terms but cannot find something comprehensively.
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Ram
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written
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Ming Tommy Tang
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written
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Ming Tommy Tang
There is a Nature article by ENCODE that includes a nice table summarising the distribution of different histone marks (table 2).
If you want to visualise histone mark data using ChIP-seq mapped reads I can recommend ngs-plot.
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