This is a test version of Biostars. For the public version, visit https://www.biostars.org.
What Kind Of Analysis Can Do You With Vcf Files?

What kinds of analyses can be completed if you have SNP, indel, and SV data in vcf files? I just need a few very broad and generic examples.

vcf dataset analysis snps sv indel
• 6,097 views • link
updated by Bioch'Ti • Bioch'Ti • written by Sheila Sheila

VCF is just a file format, there are many tools to convert data from one format to another to carry out different analysis using different softwares. First there must be a question, then find tools to answer it.

• 1 views • link
written by zx8754 zx8754

It depends on the type of analysis you want. What kind of problem are you trying to address?

• 0 views • link
written by Jordan Jordan

1 answer

The VFCTOOLS will give you a first overview of some analysis/management with vcf files... As the vcf format is spreading, more and more softwares/packages are using this format.

http://vcftools.sourceforge.net/

• 0 views • link
written by Bioch'Ti • Bioch'Ti

Log in to answer this question.

More posts like this