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rightmirem
rightmirem
Reputation:
90
Joined:
8.8 years ago
Last seen:
8.8 years ago
Latest posts by user
0 votes
0 replies
1.6K views
Using synonymous vs. non-synonymous ALT for SNP data validation
snp alignment next-gen sequencing
written by rightmirem • rightmirem
0 votes
0 replies
0 views
Comment: C: bcftools filter by ALT == '.'
written by rightmirem • rightmirem
1 vote
2 replies
5.8K views
bcftools filter by ALT == '.'
snp next-gen sequencing sequence snp
updated by Pierre Lindenbaum Pierre Lindenbaum • written by rightmirem • rightmirem
0 votes
2 replies
3.5K views
HiSAT2 segfault after long run
snp assembly next-gen alignment
updated by Kevin Blighe Kevin Blighe • written by rightmirem • rightmirem
2 votes
0 replies
0 views
Answer: A: Passing VCF file directly into ```HiSAT2-build --snp --haplotype```
written by rightmirem • rightmirem
0 votes
1 reply
3.9K views
Passing VCF file directly into ```HiSAT2-build --snp --haplotype```
snp snp next-gen alignment hisat2
written by rightmirem • rightmirem
1 vote
1 reply
0 views
Comment: C: Recreating a Genomic reference (.fastq) from a BCF file
written by rightmirem • rightmirem
0 votes
1 reply
0 views
Comment: C: Recreating a Genomic reference (.fastq) from a BCF file
written by rightmirem • rightmirem
0 votes
5 replies
3.1K views
Recreating a Genomic reference (.fastq) from a BCF file
snp assembly snp next-gen alignment
written by rightmirem • rightmirem
0 votes
0 replies
0 views
Comment: C: Under what circumstances does "REF | REF" (or REF / REF) show up in the VCF/BCF
written by rightmirem • rightmirem
0 votes
0 replies
0 views
Answer: A: Unusual reports from "bcftools stats" (making me question my data)
written by rightmirem • rightmirem
0 votes
1 reply
0 views
Comment: C: Under what circumstances does "REF | REF" (or REF / REF) show up in the VCF/BCF
written by rightmirem • rightmirem
1 vote
5 replies
2.5K views
Under what circumstances does "REF | REF" (or REF / REF) show up in the VCF/BCF file
snp next-gen software error
updated by WouterDeCoster WouterDeCoster • written by rightmirem • rightmirem
1 vote
5 replies
5.2K views
Unusual reports from "bcftools stats" (making me question my data)
snp next-gen alignment software error
written by rightmirem • rightmirem
0 votes
4 replies
2.7K views
Faster (perhaps random) access to BAM files (for collecting statistics like average read depth)
snp sam bam
updated by colindaven colindaven • written by rightmirem • rightmirem
1 vote
0 replies
0 views
Comment: C: How to validate the OVERALL quality of a VCF/BCF file (Data munging)
written by rightmirem • rightmirem
1 vote
0 replies
0 views
Comment: C: Understanding terms, specifically relating to GT:PL in a VCF file
written by rightmirem • rightmirem
0 votes
1 reply
0 views
Comment: C: How to validate the OVERALL quality of a VCF/BCF file (Data munging)
written by rightmirem • rightmirem
0 votes
3 replies
1.7K views
Unusual AF data (I think)
snp genome next-gen
written by rightmirem • rightmirem
0 votes
1 reply
0 views
Answer: A: What is " ./.:. " in the GT output of VCF/BCF
written by rightmirem • rightmirem
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