Friends, I need help. The following link is graphical representation of metabolic pathways but how can I download or get the pathway list? I used pathway entry option before. but from last few days it is not working. Please help me out.
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written
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rezwan.02 •
4 answers
CLICK this and you will get a htext list of all pathways
Enjoy.
You can use REST based KEGG API to retrieve pathway list or other information.
- List of pathways here from sty
- Components of sty pathway
You can use the CPDB for a pathway / gene mapping for ALL major websites like kegg or wikipathways in one file in the download section. http://cpdb.molgen.mpg.de If you are only interested in KEGG, you can still grep it. In the download section, you will find additional GO Term/Gene mappings.
There is a nice collection of Genesets from Broad Institute as part of GSEA in MSigDB.
I am not sure if KEGG is still available for downloading.. Others may correct me if I am wrong.
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What do you mean by "get the pathway list"? A list of genes / gene products involved in the pathway?
Do you need list of all pathways or list for pathways found in your data?