I've finished cloning a cDNA into a vector and obtained various sequence files from forward and reverse primers. I would like to combine them together to form a consensus sequence and be able to view the different reads from my different files (something like the Lasergene software but open source). What is a good program to use?
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JW •
1 answer
I would break your question down into two parts, both of which are fairly common around here.
There are numerous tools to generate consensus sequences: Multiple Sequence Alignment Editor With Option To Generate Consensus Sequence and here also. I have used this consensus tool before with success.
I use primer3 to design primers. Make sure you understand all the parameters when designing primers; just speaking from my own experience here.
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