Just a follow-up question for how the lolliplot representation would treat data: I notice the lollipops "branch out" when there are variants in the same position sometimes, but in other instances the circle lollipops are stacked vertically when they occur at the same position.

Do they stack when the coordinate and type are exactly identical (recur across samples perhaps?), but branch when they are at the same position but of different type?

Thanks!

It's been four months since this post and I am wondering if in the meantime there became additional information available on how to produce such lolliplots? Is there maybe some kind of user manual?