I'm trying to download reference annotation data --specifically bed files for exons/introns in the mm10 genome, and I saw [this question here][1] saying that you …

Hi, I need phyloP scpres for the whole human genome. I was able to download 10M positions from http://genome.ucsc.edu/cgi-bin/hgTables using these instructions: group: Comparative Genomics …

About a month ago I was able to download PubChem RDF files from the ncbi ftp site. Now I am unable to do so. Also …

Hi, I'm trying to retrieve "UTR" sequence (i.e. 5'UTR sequence) from "Exon" of "Canonical Transcript" using a list of gene symbols. First I tried Ensembl …

Hi, I am doing goseq for S. pombe but since the organism is not on the database I had to create the `lengthData` from biomart. …

<p>Hello all,</p> <p>I am in a fix. For my work, I need an exhaustive and up-to-date database of<br /> all protein sequences, especially covering ALL …

<p>Hi guys,</p> <p>I followed the Trinity/ RSEM/ EdgeR pipeline and have produced some FPKM spreadsheets for genes and isoforms.</p> <p>I am currently analysing the isoforms:</p> …

<p>How to download zebrafish dbSNP database, in vcf format at the best?</p> <p>I've checked UCSC: <a href="http://genome.ucsc.edu/cgi-bin/hgTables?org=Zebrafish&amp;db=danRer7&amp;hgsid=255390817&amp;hgta_doMainPage=1)">http://genome.ucsc.edu/cgi-bin/hgTables?org=Zebrafish&amp;db=danRer7&amp;hgsid=255390817&amp;hgta_doMainPage=1)</a> It's werid there's no dbSNP column for fish; …

<p>I am trying to find known variants of a set of genes. For example, take TRBV10-3. The link below lists four known alleles, whose sequences …

Hi all, I would like to retrieve annotated genes from the Integrated Microbial Genomes (IMG) Database, but this web interface and the "cart" is haunting …