Is there a way to convert from .bed PLINK format into HapMap genotype format? I've got bed/fam/bim PLINK files that I want to analyse with …

Hi, I want to use gemma-wrapper tool which needs files in BIMBAM format. Plink can convert from plink to BIMBAM format but it is very …

How can we convert Allele column of Hapmap SNP genotype data format into ALT and REF columns of VCF format? In HapMap format, there is …

hello all, I have a SNP genotype data of 228 accessions of cotton, on which I want to do GWAS. The genotype data has a …

What is the most complete vcf file of population allele frequencies that can be built/downloaded from public datasets nowadays? About 5 years or so ago, …

Is there a HapMap file in VCF format for use with GATK. I found a post that discusses about conversion etc. but I wanted to …

<p>how to get Genotype and its frequency for set of SNP for Caucasian population i tried hapmap but is there any alternative database or tool …

<p>I need to convert phased data (map and haplotype file) from the Hapmap Phase II data to vcf files. Are you familiar with any software …

<p>Hi all, I am a bit new to this forum and don't have a programming background (more of biology, but trying to learn bioinformatics a …

<p>Is there any standard tool out there that can convert a VCF file to Mutation Annotation Format (MAF)?</p> <p>Thanks -Kasthuri</p>