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From Phased File Formats To Vcf

I need to convert phased data (map and haplotype file) from the Hapmap Phase II data to vcf files. Are you familiar with any software that makes the conversion?

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updated by amin.sadvance • amin.sadvance • written by aleka aleka

1 answer

You may want to take a look at the GATK VariantsToVCF tool: http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_variantutils_VariantsToVCF.html

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written by Zhaorong Zhaorong

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