Entering edit mode
8.5 years ago
grishin
▴
10
Hi, i want to phase my data in vcf format using impute2's "-phase" option. So i tried to convert vcf file with plink:
plink --vcf data.vcf --recode oxford --out converted_data
But produced .map file does not conform to the required three-column format.
Is there any other way to convert vcf to impute2 format?