This is a test version of Biostars. For the public version, visit https://www.biostars.org.
From PHASE to HaploView

I finally built a PHASE input file (.inp) and my analysis was executed successfully.

Now I have phased output which consists of several files:

  • test4.out_freqs : haplotype frequency estimates
  • test4.out_pairs : most likely haplotype pairs for each individual
  • test4.out_recom : estimates of recombination parameters
  • test4.out_monitor : file for monitoring convergence

I would like to visualize the haplotypes with HaploView.

Is there any tool or script which converts the output from PHASE to any HaploView format?

phase haploview phasing haplotypes visualization
• 2,848 views • link
written by veronicaschroeder78 veronicaschroeder78

Hello, Were you able to find a solution for this? I am also trying to do the same thing. Thanks, Janet

• 0 views • link
written by janetw • janetw

0 answers

No answers yet.

Log in to answer this question.

More posts like this