Is there a HapMap file in VCF format for use with GATK. I found a post that discusses about conversion etc. but I wanted to know if there is a VCF file that is already created.
I have a VCF file and I want to generate gVCF file from that. http://blog.kokocinski.net/index.php/gvf-format?blog=2 Does anyone know of a converter that convert a VCF …
<p>I am testing some variant callers on the following dataset:</p> <p><a href='http://www.ebi.ac.uk/ena/data/view/SRP019719'>http://www.ebi.ac.uk/ena/data/view/SRP019719</a></p> <p>I've had no problem running my same scripts with some 1000 genomes data …