Dear All,
Does anyone know about an XGMML standalone parser implemented in Java/Perl ? I have been searching for a while, but I couldn't find anything except Cytoscape source code (not really standalone), and this perl module which generates a file, but do not parse it. What I am basically trying to do is read in an XGMML file, remove a couple of nodes (and edges) based on a list I have and add some additional information to the nodes and edges, (Gene Id, pathway Id, interaction source .....) although it can be done by adhoc scripting, I prefer to use a library to read in or write out the XGMML file.
Thanks a lot.
great... Thank you I will give it a go, by the way I think that is the correct xsd schema for xgmml files