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Chicken Specific Database

Hi, does anyone know if there is a specialized database for chicken pathways, gene information, etc, different than KEGG, or Entrez gene?

BTW, i googled it and either there isn't or it has a specific name i don't know about.

i'm looking something like yeastgenome.org for chickens.

Regards

gene pathway database
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updated by Biostar Biostar • written by Raygozak Raygozak

4 answers

Have you tried Ensembl and UCSC Genome Browser? Both sites have a lot of information, files to download and APIs to use.

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written by JC JC

I just remembered: there is a gallus Reactome: http://gallus.reactome.org/ I don't know how current it is.

You can find a few others on the Resources Wiki: http://wiki.reactome.org/index.php/Reactome_Resource_Guide

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written by Mary Mary

There is also AgBase and chicken is one of the organisms they cover. They have GO annotations for chicken gene products and have links to other resources.

http://www.agbase.msstate.edu/cgi-bin/information/Chick.pl

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written by yeastgenome • yeastgenome

And don't forget about WikiPathways, an open source, community curated resource for biological pathways. All the content is under creative commons and there are lot of programmatic access options. Here's the list of their chicken pathways.

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written by xanderpico xanderpico

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