How do I do pathview analysis to get Kegg pathways with DEG lists
Hello everyone, I have the DEG list of gene name of upregulated and downregulated genes, I want to upload this data into pathview to get the kegg pathways but I am not able to because there is some other data type which is acceptable for pathview. Does anyone know how I can do it or suggest any alternatives for pathview to get kegg pathways for the dataset. I am not proficient at coding and did my rna-seq through galaxy so I am looking for something simple. But even if it is complex, I am okay with it cause I have been with this problem for weeks. Hoping for your response.
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ashwing.kofficial •
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There are a couple simple to use internet programs that can do this + geneontology.
DAVID: https://david.ncifcrf.gov/tools.jsp
PANTHER: http://pantherdb.org/
g:Profiler: https://biit.cs.ut.ee/gprofiler/gost
Thanks a lot for your comment. But this is what I am looking for ,where my genes are highlighted so that I can understand it faster and better. I have seen for other options but only pathview offers such an option. If you have any platform which can give me this result, please let me know