mutation analysis, somatic alteration, gene
Hi people, I want to perform mutation analysis for comparison between two groups. I downloaded mutation file of TCGA. I dont know how to do this analysis and what we need to compare ? what kinda test needs to be used? what is the workflow?
I assumed these three columns in mutation file can be importan but I am not sure which one I need to use:
VARIANT_CLASS
Variant_Classification
Variant_Type
anyone has instruction? Thanks
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