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Tumor and matched normal data

Hi,

How can I fetch tumor and matched normal data from SRA toolkit? Please suggest.

wes wgs
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updated by GenoMax GenoMax • written by shivangi.agarwal800 shivangi.agarwal800

1 answer

Use sra-explorer (LINK) with right keywords. Get links to download data from results. Use directions included in: sra-explorer : find SRA and FastQ download URLs in a couple of clicks

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written by GenoMax GenoMax

Ya, Thanks. SRA-explorer making the things convenient. But let's say if I want to download 100 breast tumor samples of different tumor stages and their matched normal. Then, How should I go and get the accession id to download it using SRA-explorer?

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written by shivangi.agarwal800 shivangi.agarwal800

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