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What do R, Y, S, G... values mean in genotype column of output of VarScan?

Hi,

Do you know what these letters like R, Y, S, G... (in genotype column) mean in output file from VarScan? Or do I always need to generate a VCF file if I want to know the genotype in that position for tumour and normal samples?

gt

varscan ngs snp
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updated by zx8754 zx8754 • written by biom.andressa • biom.andressa

1 answer

degenerate notation ?

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written by Pierre Lindenbaum Pierre Lindenbaum

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