Merging mapped-BAM files using MergeSamFiles tool [ERROR]------ Need help
Hello everyone,
I have mapped a sample sequence to the human reference genome (GRCh38) using BWA-MEM tool. I have loaded my sample data (format: Fastq-Sanger) into the galaxy, as well as the reference genome (format: FASTA).
After mapping the sequence to the reference genome, if I try to merge the mapped-BAM files using MergeSamFiles tool, I am getting an error like this -
Error:
An error occurred with this dataset:
Error: Unable to access jarfile/MergeSamFiles.jar
I will not be able to proceed to the next step without merging these mapped-BAM files.
Any suggestions or help would be greatly appreciated.
Thank you.
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manojmonmax •
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This answer was not suitable for you, sorry!
this is wrong. The file just does not exist. The /path/to/your/MergeSamFIles.jar is not an executable but a jar file, so it is not a PATH problem.
deleting answer then, thanks for realizing
Please ask on the Galaxy help forum: https://help.galaxyproject.org/