tool for calculate tumor-only sample purity of wgs or wes
hi, is there a tool to calculate tumor only samle purity of wgs or wes?
thanks a lot
next-gen
genome
• 1,075 views
•
link
written
by
linouhao •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
CNA calling in mouse tumor-normal WGS
written by German.M.DemidovHi community, do you know a tool for CNA detection in tumors for 30x WGS tumor-normal mouse data? There is no cohort, so only for …
-
Tumor phylogeny: WGS or deep WES?
written by Steve •Hi members, I am designing an experiment where I will need to construct a tumor phylogenetic tree from different areas of a primary tumor. Should …
-
tumor fraction estimation for ctDNA panel sequecing data
written by J.F.JiangHi all, Tools such as PureCN can estimate purity for tumor samples based on CNVKit outputs, I found it hard to estimate the purity for …
-
how should I filter call.cns results according to cn depth p_ttest probes weight
written by linouhao •1 the cnvkit doc seems to be much later than the conda version, and there is not a good explatation of how to filter the …
-
estimate tumor purity from capture panel data using tumor-only mode
written by lffu_0032Hi, everyone, i have a question: i want to call CNV from FFPE tumor using capture panel data, I need to estimate the tumor purity …
-
estimate tumor purity from target capture sequencing
written by lffu_0032hi, everyone, is there a good way to estimate the tumor purity from target capture sequencing?i need to calculate the copy number and without the …
-
Techniques for finding tumor purity from Oncomine panel?
written by taylor.falk3 •Has anyone found success in determining tumor purity from oncomine data? I've run the gambit of purity and heterogeneity tools and all seemed to be …
-
Estimating the purity of tumor cells in gene expression microarray data
written by Shamim SarhadiHi Is there any tool for defining the tumor cell purity in gene expression microarray data? Thanks in advance
-
Loss of Heterozygosity tools for WGS / WES samples
written by waqasnayabHi, Although, there are many tools available for loss of heterozygosity (LOH) in paired samples (tumor and non-tumor), whether they are WGS or WES. But, …
-
Copy number detection tools
written by zhaolianhe1992 •Hi all, can you give me a list of some copy number variation detection tools in WES or WGS? For tumor/normal pairs,especially. Thanks! lianhe