CNA calling in mouse tumor-normal WGS

Hi community,

do you know a tool for CNA detection in tumors for 30x WGS tumor-normal mouse data?

There is no cohort, so only for one pair of tumor/normal...

Thanks a lot!

cnv

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written 3.9 years ago by German.M.Demidov

1 answer

There should be quite a few... Shameless plug, I wrote mine a while ago, cnv_facets

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written 3.9 years ago by dariober

I actually like FACETS - but I though it is for WES and for humans =) will check it out! thanks!

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written 3.9 years ago by German.M.Demidov

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