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Finding molecular divergence

I need to find the molecular divergence between different strains of the same viral species. They are not whole genome sequences I have no idea where to start. Can someone help me?

snp snp viral virus genome molecular divergence
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updated by Biostar Biostar • written by shynilasanthi • shynilasanthi

Well, what data do you have?

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written by Friederike Friederike

I have sequences from the RdRp gene region of BtCoV. Sanger sequencing method was used. and Some of the data were retrieved from NCBI Thank you

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written by shynilasanthi • shynilasanthi

I have no idea where to start

I suggest PubMed and your favorite web search engine, e.g. using a query like "phylogenetic analysis virus tutorial"

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written by Friederike Friederike

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