PAML or whole genome
How to run PAML for the whole genome? I have 100s of bacterial genomes from same species and I want to see what genes are under positive selection. I made the whole genome tree and thinking of running PAML for each gene.
Is there a way to run PAML for the whole genome?
Do I need to create different tree for different genes if all sequences are form same species?
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ragavishn •
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