I created an interactive volcano plot using the code below using glXYPlot function in Glimma. A separate HTML page is created; however, when I knit …

Hi, Can someone point out a tutorial which helps me to generate the **Kimura substitution plots** from eukaryotic genomes (soft masked - Repeatmasker) ? I …

Hi guys, I'm interested to make a Volcano plot and using different color i want to show which genes are UP and which are DOWN. …

Dear all, I processed raw methylation data using minfi and methylation array analysis libraries and finally came to a point that after I fit my …

Hi there, I have such a dataset below, I try to draw a manhattan plot in R. Each chromosome has 2 different groups as Group …

HI With the normalized+ transformed gene-counts information using autoplot function plotted the PCA. I had additional data something like hormonal levels(6 variables), is it possible …

HI I plotted the DGE's using glMDPlot, showing same color for all genes. http://freeimage.host/i/2V7hiJ How do I show up/down DGE's in color. suggestions. glMDPlot(fit2,counts = …

Hi Can any one show some good dot-plots showing the differential gene expression analysis for up/down regulated genes. I tried cluster profile, its not working …

I want to show relationship between down regulation and up regulation of expression of a gene with that of patients relapse status in cancer. However, …

I have made a Contrasts matrix as design <- model.matrix(~0+f) colnames(design) <- levels(f) design fit <- lmFit(eset,design) names(fit) cont.matrix <- makeContrasts(C9T9="Control9-Treated9",C24T24="Control24-Treated24",........................................,levels=design) cont.matrix fit2 <- contrasts.fit(fit, …