PCA using ggplot2/ggfortify autoplot function ?
HI
With the normalized+ transformed gene-counts information using autoplot function plotted the PCA.
I had additional data something like hormonal levels(6 variables), is it possible to show that information as well along with the genecounts information on one PCA plot?
autoplot(sample_pca,data = sample_info,colour = "sample",shape = "treatment")
some suggestions.
• 1,440 views
•
link
written
by
sunnykevin97
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
CIBERSORT, frequency and fraction, immune cell infiltration
written by Rob •
-
merging data; remove extra rows
written by Rob •
-
PCA using autoplot function
written by sunnykevin97
-
DESeq2: How do one label specific points (gene) on the DESEq2 plot?
written by jaqx008
-
how I can download both of the two files from ebi
written by yueli7
-
Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities…
written by Mari •
-
Plot association between genotype and splicing ratio using ggplot
written by waqaskhokhar999
-
Complexheatmap annotation legend
written by Prakash
-
EdgeR differential expression and heatmap
written by Kasthuri
-
degree of genes
written by yueli7
