Detection of excess IBD segments in patients
Hi.
I have SNP array data for 10 case and 100 control subjects. I think that the case subjects have local shared IBD segments on chromosome 10.
So, I would like to detect excess IBD segments in case subjects. I could identify shared IBD segments in each pair of the all subjects using SHAPEIT2 and GERMLINE software. However, I don't know how to identify where the excess IBD segments are in case subjects.
Could you tell me how I do should?
• 1,040 views
•
link
written
by
Apprentice
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Method for detecting X-chromosome aneuploidy from SNP array data
written by Apprentice
-
IBD analysis using Plink (interpretation of plink.genome file)
written by melissachua90 •
-
Excess average identical-by-descent in genotyping data
written by coleman_jonathan
-
calculate mutual information between pairs of SNPs
written by Dhara Awasthi •
-
Calculation of frequency of each haplotype from .hap file
written by Apprentice
-
CNV detection in mRNA , SNP array using R
written by Begali •
-
How to investigate reference and alternative alleles of many SNPs
written by Apprentice
-
GERMLINE software segfault error
written by kiminsigne •
-
Ibd (Identity By Descent) In Control-Cases Study
written by eXpander
-
Shared Haplotye In Specific Region Based On Family Based Study
written by Omid
