IBD analysis using Plink (interpretation of plink.genome file)

I ran an IBD analysis using PLINK to identify any inconsistencies in parental genotypes using a p<.01 threshold.

Command:

./plink --file ped_final_re_MHC_mod --genome rel-check --min 0.01

The command generated a plink.genome file.

How do I use the information from plink.genome to answer: How many paternal or maternal subjects have a p<.01 when compared to their offspring?
How many paternal or maternal subjects have p<.01 compared to each other?

snps ibd plink

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written 4.5 years ago by melissachua90 •

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