More posts like this
-
Aminoacids range of protein domains in PDB structures
written by Jimpix •Hi! It is available in to download information about amino acids range of protein domains from each PDB structure from some database? Thanks for any …
-
overlay of DE data on reactome pathway
written by kanwarjagI want to overlay my DE of genes data on the Reactome pathway @ https://reactome.org/PathwayBrowser/#/R-MMU-5205647&DTAB=MT The file can be downloaded as SVG/SBGN/ PDF IS there …
-
Meaning of the header in secondary structure of protein?
written by Bioinformatics313 •I download Secondary Structure Files from https://www.rcsb.org/pdb/static.do?p=download/http/index.html#ss. I want to know what does it mean the letter after PDB code in the secondary structure(header)? >102L:A:secstr …
-
Download multiple PDB from text file
written by cc •hello, I've been recently trying to download multiple PDB sequence entries from a text file called list_PDB.txt In this file there are 6000 pdb like …
-
How to get the PDB ID of a viral protein?
written by kschaf012 •How can I obtain the PDB ID for a protein from a Genbank flat file? I want to use PdbEfold for a putative ankyrin repeat …
-
KEGG pathway overlay of user gene list
written by kanwarjagI want to overlay my differential expressed genes to a known pathway say let us say as an example one pathway in humans - @ …
-
Downloading all pdb files from RCSB
written by stackf01 •<p>Hello. Is there any way to download all the proteins 3D structure from rcsb? I want to download all in the pdb format. Help please. …
-
Mirna Pdb Structures
written by Repsy •<p>Hi all,</p> <p>I want to get all the miRNAs PDB structures from PDB. But When i do advance search in PDB, it gives me only …
-
How To Search Pdb For Sequence Regions That Are Resolved? (Edited)
written by Lyco<p>PDB offers to download a fasta file containing one sequence per individual chain. This file is very useful and I use it routinely for checking …
-
Downloading Superimposed Pdb Files With Ligand..
written by Ananth •<p>I am trying to superimpose a protein structure having a ligand with another protein molecule. </p> <p>I've tried <strong>Swiss PDB viewer</strong> to superimpose, but the …
see https://chemistry.stackexchange.com/questions/22135