Retrieve dataset from EMBL

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3.8 years ago

andres.firrincieli 3.6k

Very newbie question here:

I am looking for this specific dataset: PRJEB31441, which should have been deposited at EMBL. I have used the search bar at this link: https://www.ebi.ac.uk/ena/browser/home, but the dataset does not seems to be available. Perhaps I am doing something wrong.

Any help?

Thanks

EMBL • 792 views

ADD COMMENT • link 3.8 years ago by andres.firrincieli 3.6k

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Its possible that with the paper this comes from being so recent, the dataset hasn't been marked as public yet.

ADD REPLY • link 3.8 years ago by i.sudbery 19k

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That is weird. The paper was published online on March 2020. At this point I should contact the corresponding author

Thanks!

ADD REPLY • link 3.8 years ago by andres.firrincieli 3.6k

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You could also try contacting ENA and pointing out the paper is out. I'm pretty sure that they'll auto-release if the paper is published.

Its also possible that metagenomics studies don't go in ENA, but have a different database and EMBL. I'm not a metagenomcis expert.

ADD REPLY • link 3.8 years ago by i.sudbery 19k

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