Is there a database or catalog of the proteins secreted through the Type 3 Secretion System available? · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

Is there a database or catalog of the proteins secreted through the Type 3 Secretion System available?

Id be interested in finding a database of all the proteins that are secreted through the T3SS across all organisms that possess one. It might be possible to catalog them by species by hand, but I think to get as complete a list as can be gotten for each organism, might require an algorithmic approach... If that exists, how extensive is it? Would each protein be characterized in terms of its fxn/ PPIs/ effects on host transcriptome / etc?

I'd be most interested in C Rodentium and E. coli.

microbiology metagenomics

• 1,174 views • link

written 6.0 years ago by LauferVA

http://secretepdb.erc.monash.edu.au/

• 0 views • link

written 6.0 years ago by GenoMax

0 answers

No answers yet.

Log in to answer this question.

More posts like this

Selecting query format for repeated calls to NCBI's API
written 2.5 years ago by LauferVA

Hi Biostars, I need to make some fairly extensive calls for RNA-Seq records in SRA, then annotate them with metadata, and I'd like to do …
Job: Group Leader – Structural or Molecular Systems Biology
written 4.0 years ago by EMBL Recruitment •

The Structural and Computational Biology (SCB) Unit at EMBL Heidelberg pursues an ambitious and cross-disciplinary research program in integrated structural and computational systems biology, bridging …
Filtering bacteria function
written 4.0 years ago by Lluís R.

I want to find articles from a subset of functions (EC codes) that possibly are related to a disease (inflammatory bowel disease). Which is the …
Job: Group Leader – Structural Systems Biology
written 5.0 years ago by EMBL Recruitment •

The Structural and Computational Biology (SCB) Unit at EMBL Heidelberg pursues an ambitious research program in integrated structural and computational systems biology, bridging between various …
Job: Postdoctoral researcher for Microbial Reconstructions at DTU Biosustain
written 5.7 years ago by info

**Do you want to help drive the next generation of genome scale reconstruction?** The Novo Nordisk Foundation Center for Biosustainability (DTU Biosustain) is seeking highly …
Right MongoDB approach for a multigenomic database?
written 7.0 years ago by Emilio P. •

Hello, We want to implement a multigenomic database, our goal is to store information from multiple Enterobacteriaceae (E. Coli, Salmonella, Shigella, etc...). This kind of …
News: Beyond pest control: What can we learn from parasites?
written 7.4 years ago by Michael Dondrup

[Parasites][1] are infamous for exploiting other organisms for food, they are often treated as pests and pathogens with the narrow focus to get rid of …
Finding novel domains in a group of proteins
written 8.5 years ago by crouch.k •

I have been posed the following problem by a collaborator and I could use some advice on how to approach it: The collaborator works with …
Some clarification on enrichment analyses and pathway analyses?
written 8.7 years ago by kirannbishwa01

I have analyzed my RNAseq data and identified the genes with significant `foldchanges and p-values`. **Next step is to do enrichment analyses.** I have been …
Job: Data Scientist (Jones Group), Wellcome Trust Sanger Institute , Cambridge, UK
written 9.2 years ago by Recruit

Salary Range: £31,498 to £39,729, plus excellent benefits. The Wellcome Trust Sanger Institute are seeking to recruit a Data Scientist who can facilitate the scientific …