This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Python script to download fasta files from ncbi

Hi

Could anyone share the python script to download fasta sequence from NCBI?

sequence

1 answer

Kai Blin's ncbi-genome-download (LINK). If you need whole genomes.
Otherwise: A: download sequences form ncbi using python

You should also look into Entredirect if you have a lot of accession numbers.

Log in to answer this question.