What is the best mapping tool for LncRNA analysis
Hi
What is the best mapping tool for lncRNA analysis. STAR or Hisat2 or Bowtie ?
rna-seq
• 901 views
•
link
written
by
sabaghianamir70 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Best Tool for Fast RNA-Seq Transcriptome Alignment to Extract Unmapped Reads
written by aboll •Hello all, I have RNA-Seq data from human cancer samples. I ultimately want to single out reads that do not align properly (i.e., don't align …
-
lncRNA and mRNA analysis on Total RNA Sequencing data
written by kanika.151# Question: Best Practices for Analyzing mRNA and lncRNA from totalRNA Sequencing Data We performed totalRNA sequencing on our samples and conducted two separate analyses: …
-
LncRNA pipeline
written by Researcher •HI ALL, I am working with lncrna, my pipeline is mapping with star and then sorting, folloed by stringtie and from the output using awk …
-
Question about RNA-Seq data alignment
written by mohammedtoufiq91Hi, I have a question about genome alignment. I am working with RNA-Seq dataset to study the impact of Liquid Culture in response to virus …
-
BRB-SeqTools for RNA seq Analysis
written by Fizzah •Hello, I am doing transcriptomic analysis on cotton genome and recently came across with this BRB-SeqTools that allows pre-processing of RNA and DNA data and …
-
What is the best reference genome for Mir-seq analysis
written by sabaghianamir70 •Hi I am currently studying on MiRNAs with analyze the Mir-seq,s data. So I am wondering what is the best reference genome to use for …
-
What is the best tool for estimate the counts of genes with very low expression rate ?
written by sabaghianamir70 •i looking for a tool which can give me "count number" for very low expression rate genes or pseudogenes like PER3. What is the best …
-
RNA-seq mapping Reference genome
written by k.kathirvel93Hi EveryOne, I am using STAR and HISAT2 and two more tools RNA-seq data analysis. My question is, should I align my Draft genome with …
-
Mapping and alignment.
written by harishkiran.handral •Hi there, I'm new to RNA-sequencing. I would like to know, which is the best tool to start with for mapping and alignment of sequences. …
-
Hisat2 command line options
written by nir.yakovi •Hi! I've been trying to find my answer via Google but came up empty handed. I need to convert a specific Bowtie command line to …