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Reference Data Set Download from 1000 genomes

Hi,

I want to perform population stratification analysis. I need to download indian genomes along with other ancestry genomes from 1000 genomes data set. How to download that. There are so many release in 1000 genomes. Can you post the link?

Regards,
Karthick

1000genomes

Hi I have created the plink files based on the tutorial mentioned above . But the snp ids are like as follows: (chr:position:allele1:allele2). There is no rs ID. But my sample data has rsIDs. How to compare both when they have inconsistent SNP ids?

1       1:14599:T:A     0       14599   A       T
1       1:14930:A:G     0       14930   G       A
1       1:15211:T:G     0       15211   T       G
1       1:15274:A:G     0       15274   G       A

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1 answer

Please check Kevin's tutorial

Thank you very much! Yean.

Best, Karthick

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