how to remove bedpe deplication

hi I want to remove duplication in bedpe the format like this : chr start end chr start end how to remove overlap in this bedpe file? thanks

chip-seq hic

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updated 6.3 years ago by ATpoint

• written 6.3 years ago by liulinli17m •

1 answer

Exact duplications?

sort -k1,1 -k2,2n -k3,3n -k4,4 -k5,5n -k6,6n -u

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written 6.3 years ago by ATpoint

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