HELP! Find a position in a fragment
Hi! I'm new in the bioinformatics world and I would like to analyse a data but I need help! Specifically, I want to know if I can find the fragments or reads that contains a specific position in a file like this format:
COLUMN 1: chr, 1, 1, 1, 1 COLUMN 2: start 1, 3, 5, 10 COLUMN 3: end 5, 6, 10, 100
F.e: If I want to know how many fragments contains the position number 2... How can I do this in bash? THANK YOU VERY VERY MUCH IN ADVANCED!
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