Find a position in a fragment
Hi! I'm new in the bioinformatics world and I would like to analyse a data but I need help! Specifically, I want to know how if I can find the fragments or reads that contains a specific position in a file like this format:
chr start end
1 1 5
1 3 6
1 5 10
1 10 100
F.e: If I want to know how many fragments contains the position number 2... How can I do this in bash? THANK YOU VERY VERY MUCH IN ADVANCED!
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finswimmer
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Momo •
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Momo •
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there is no need to shout ! ;)
I'm thinking this can be solved by using one of the bedtools (bedIntersect?)
Thank you very much (without shouting) I will take a look to bedIntersect :)
Hello and welcome to biostars Momo ,
some advices for your posts:
codeoption) to present your post better. zx8754 have done it for you this time.fin swimmer
Thank you!