Graphing NGS data · Biostar

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Graphing NGS data

I have Illumina reads from my NGS samples and I mapped them to a reference genome. Now I have mapped reads per chromosome and coverage data. How do I plot all chromosome coverage as one graph? i.e. a genome-wide coverage? Also, How can I plot coverage from multiple samples per chromosome on the same graph such that y-axis is the same? I am a beginner at NGS analysis.

sequencing

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updated 6.3 years ago by GenoMax

• written 6.3 years ago by n.joshi17 •

1 answer

Look at Qualimap to begin with for individual samples. MultiQC can then be used to aggregate multiple samples analyzed by Qualimap.

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written 6.3 years ago by GenoMax

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