How to make functional annotation of a complete bacterial genome?
I have a complete genome from a bacterium. I would like to perform functional annotation of this entire genome (something similar to gene ontology) for free. What softwares could I use to make it? Do you have any suggestion?
I would like to have graphs (like pie chart) with function of these genes.
1 answer
Hi
You could try MyPro https://sourceforge.net/projects/sb2nhri/files/MyPro/
You only have to put in the fastq file and it gives you everything starting from processing, assembly, annotation. It gives you outputs after combining results of atleast 4 tools.
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One option would be to try Prokka: https://github.com/tseemann/prokka